gwasrapidd 0.99.8

  • genomic_contexts of object variants includes now the column is_mapped_gene.

gwasrapidd 0.99.7

gwasrapidd 0.99.5

gwasrapidd 0.99.4

gwasrapidd 0.0.1

  • Updated gwasrapidd packaging to comply with Bioconductor guidelines (BiocCheck::BiocCheck()).

gwasrapidd 0.0.0.9015

  • Fixed typo in cheatsheet.

gwasrapidd 0.0.0.9014

gwasrapidd 0.0.0.9013

  • Added the dataset cytogenetic_bands.

gwasrapidd 0.0.0.9012

  • Updated README installation command to use the new remotes package.
  • Devel version badge is now hardcoded directly instead of using a call to badger.

gwasrapidd 0.0.0.9011

  • get_variants() now accepts a new parameter: std_chromosomes_only. This allows to select whether variants mapped to scaffolds other than the standard chromosomes are returned. By default, now, get_variants() only returns variants mapped to chromosomes 1 thru 22, X, Y, or MT. This behaviour is now in line with results returned by the Web UI.
  • Fixed bug with multiple_snp_haplotype and snp_interaction. NA values in columns multiple_snp_haplotype and snp_interaction of associations tibble in associations S4 object were being mapped to character type instead of logical. This is now fixed.
  • Constructors for GWAS Catalog S4 objects ensure no NAs are in primary keys.
  • Increased test coverage.

gwasrapidd 0.0.0.9010

  • Changed type of column association_id in the S4 class associations from integer() to character(). This saves us from unnecessary coercions from integer to character when searching by association identifiers.
  • The cheatsheet is also changed to reflect this update.

gwasrapidd 0.0.0.9009

gwasrapidd 0.0.0.9008

  • Improved the Getting Started vignette.

gwasrapidd 0.0.0.9007

gwasrapidd 0.0.0.9006

  • Added a cheatsheet.

gwasrapidd 0.0.0.9005

  • Improved test coverage significantly.

gwasrapidd 0.0.0.9004

  • Reorganized mock fixtures. Now mock file paths are all under 100 chars. No more R CMD check whining.

gwasrapidd 0.0.0.9003

  • Reference documentation is organized in the website.