Function reference • ensemblr

Archive

get_id(): Get details about an Ensembl identifier

Cross references

get_xrefs_by_ensembl_id(): Get cross-references by Ensembl ID

get_xrefs_by_gene(): Get cross references by gene symbol or name

Information

get_assemblies(): Get details about the genome assembly of a species

get_cytogenetic_bands(): Get cytogenetic bands by species

get_divisions(): Retrieve Ensembl divisions

get_species(): Get Ensembl species

get_populations(): Get populations for a species

get_individuals(): Get individuals for a population

get_karyotypes(): Get the karyotype of a species

get_toplevel_sequence_info(): Get toplevel sequences details

get_toplevel_sequences(): Get toplevel sequences by species

get_variant_consequences(): Retrieve variant consequences

get_variation_sources(): Retrieve variant sources

get_analyses(): Get analyses behind Ensembl databases

get_ensembl_genomes_version(): Get Ensembl Genomes version

get_data_versions(): Retrieve the data release version(s) available on the Ensembl REST server.

get_rest_version(): Retrieve the current version of the Ensembl REST API

get_software_version(): Retrieve the Perl API version

get_versioning(): Retrieve Ensembl REST versions

Linkage disequilibrium

get_ld_variants_by_window() get_ld_variants_by_pair() get_ld_variants_by_range() get_ld_variants_by_pair_combn(): Get linkage disequilibrium data for variants

Utilities

genomic_range(): Create genomic range strings

is_ensembl_reachable(): Is the Ensembl REST API server reachable?

request(): Request an endpoint from Ensembl REST API

Data sets

rest_api_endpoints: Ensembl REST API Endpoints.